Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 216 (4-3042952)
NCBI Strain Identifiers HVH 216 (4-3042952)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 3
23S Count 6
tRNA Count 20
Contig Count 37
N50 Contigs 251,024 bp
Longest Contig 508,319 bp
Scaffold Count 18
N50 Scaffolds 634,545 bp
Longest Scaffold 921,050 bp
Genome Size 5,237,216 bp
Protein Count 4,854
Coding Density 87.18%
GC Percentage 50.46%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_216_4-3042952_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885855
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000459355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,101
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 19
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1281143
Total Gap Length 19525
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVZP00000000.1