Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 205 (4-3094677)
NCBI Strain Identifiers HVH 205 (4-3094677)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 44
N50 Contigs 242,708 bp
Longest Contig 473,199 bp
Scaffold Count 13
N50 Scaffolds 2,751,910 bp
Longest Scaffold 2,751,910 bp
Genome Size 5,387,922 bp
Protein Count 5,114
Coding Density 87.24%
GC Percentage 50.69%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_205_4-3094677_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885844
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000459155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,561
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 31
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281132
Total Gap Length 27231
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVZF00000000.1