Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 194 (4-2356805)
NCBI Strain Identifiers HVH 194 (4-2356805)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 37
N50 Contigs 247,802 bp
Longest Contig 733,544 bp
Scaffold Count 7
N50 Scaffolds 3,231,505 bp
Longest Scaffold 3,231,505 bp
Genome Size 5,241,726 bp
Protein Count 4,868
Coding Density 86.18%
GC Percentage 50.47%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_194_4-2356805_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885833
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000458935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,270
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 30
Species Taxid 562
SSU Count 3
Submitter Broad Institute
Taxid 1281121
Total Gap Length 82180
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVYU00000000.1