Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 189 (4-3220125)
NCBI Strain Identifiers HVH 189 (4-3220125)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 71.43
5S Count 7
16S Count 4
23S Count 7
tRNA Count 20
Contig Count 63
N50 Contigs 442,764 bp
Longest Contig 910,278 bp
Scaffold Count 19
N50 Scaffolds 960,031 bp
Longest Scaffold 2,173,659 bp
Genome Size 5,491,974 bp
Protein Count 5,152
Coding Density 86.69%
GC Percentage 50.61%
Ambiguous Bases 1
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_189_4-3220125_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885828
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000458845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,653
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 44
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281116
Total Gap Length 54456
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVYP00000000.1