Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 173 (3-9175482)
NCBI Strain Identifiers HVH 173 (3-9175482)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 8
tRNA Count 20
Contig Count 14
N50 Contigs 3,927,197 bp
Longest Contig 3,927,197 bp
Scaffold Count 9
N50 Scaffolds 4,943,808 bp
Longest Scaffold 4,943,808 bp
Genome Size 5,345,647 bp
Protein Count 5,011
Coding Density 87.71%
GC Percentage 50.65%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_173_3-9175482_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885815
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000458625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,480
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 5
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1281103
Total Gap Length 4171
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVYD00000000.1