Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 147 (4-5893887)
NCBI Strain Identifiers HVH 147 (4-5893887)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 7
tRNA Count 20
Contig Count 28
N50 Contigs 266,667 bp
Longest Contig 840,969 bp
Scaffold Count 3
N50 Scaffolds 3,133,280 bp
Longest Scaffold 3,133,280 bp
Genome Size 4,933,156 bp
Protein Count 4,587
Coding Density 87.53%
GC Percentage 50.71%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_147_4-5893887_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885792
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000458195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,926
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 25
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281080
Total Gap Length 25904
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVXG00000000.1