Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 146 (4-3189767)
NCBI Strain Identifiers HVH 146 (4-3189767)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 47
N50 Contigs 228,558 bp
Longest Contig 419,399 bp
Scaffold Count 7
N50 Scaffolds 1,907,383 bp
Longest Scaffold 1,947,645 bp
Genome Size 5,402,382 bp
Protein Count 5,054
Coding Density 86.53%
GC Percentage 50.51%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_146_4-3189767_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885791
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000458175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,450
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 40
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281079
Total Gap Length 73688
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVXF00000000.1