Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 145 (4-5672112)
NCBI Strain Identifiers HVH 145 (4-5672112)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 5
tRNA Count 20
Contig Count 15
N50 Contigs 1,077,453 bp
Longest Contig 2,239,157 bp
Scaffold Count 4
N50 Scaffolds 4,730,439 bp
Longest Scaffold 4,730,439 bp
Genome Size 5,373,801 bp
Protein Count 5,075
Coding Density 87.85%
GC Percentage 50.72%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_145_4-5672112_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885790
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000458155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,540
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 11
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281078
Total Gap Length 8448
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVXE00000000.1