Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 139 (4-3192644)
NCBI Strain Identifiers HVH 139 (4-3192644)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 22.22
5S Count 7
16S Count 3
23S Count 7
tRNA Count 19
Contig Count 79
N50 Contigs 132,978 bp
Longest Contig 319,305 bp
Scaffold Count 47
N50 Scaffolds 334,922 bp
Longest Scaffold 568,779 bp
Genome Size 5,180,690 bp
Protein Count 4,760
Coding Density 85.05%
GC Percentage 50.58%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_139_4-3192644_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885784
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000458035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,130
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 32
Species Taxid 562
SSU Count 3
Submitter Broad Institute
Taxid 1281072
Total Gap Length 173798
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVWY00000000.1