Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 121 (4-6877826)
NCBI Strain Identifiers HVH 121 (4-6877826)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 60
N50 Contigs 267,610 bp
Longest Contig 553,370 bp
Scaffold Count 12
N50 Scaffolds 964,352 bp
Longest Scaffold 2,322,385 bp
Genome Size 5,424,213 bp
Protein Count 5,038
Coding Density 86.00%
GC Percentage 50.73%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_121_4-6877826_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885770
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000457775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,473
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 48
Species Taxid 562
SSU Count 8
Submitter Broad Institute
Taxid 1281058
Total Gap Length 83708
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVWK00000000.1