Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 104 (4-6977960)
NCBI Strain Identifiers HVH 104 (4-6977960)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 7
23S Count 5
tRNA Count 20
Contig Count 74
N50 Contigs 232,337 bp
Longest Contig 646,504 bp
Scaffold Count 14
N50 Scaffolds 861,467 bp
Longest Scaffold 2,653,883 bp
Genome Size 5,361,766 bp
Protein Count 5,045
Coding Density 85.97%
GC Percentage 50.63%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_104_4-6977960_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885752
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000457455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,472
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 60
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1281040
Total Gap Length 98987
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVVT00000000.1