Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 92 (4-5930790)
NCBI Strain Identifiers HVH 92 (4-5930790)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 6
tRNA Count 19
Contig Count 71
N50 Contigs 281,476 bp
Longest Contig 459,486 bp
Scaffold Count 10
N50 Scaffolds 1,658,568 bp
Longest Scaffold 2,106,832 bp
Genome Size 5,398,063 bp
Protein Count 4,943
Coding Density 85.03%
GC Percentage 50.38%
Ambiguous Bases 1
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_92_4-5930790_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885741
Country Denmark
Date 2013-09-06
Genbank Assembly Accession GCA_000457325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,168
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 61
Species Taxid 562
SSU Count 4
Submitter Broad Institute
Taxid 1281029
Total Gap Length 110861
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVVN00000000.1