Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 89 (4-5885604)
NCBI Strain Identifiers HVH 89 (4-5885604)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 32
N50 Contigs 346,779 bp
Longest Contig 615,024 bp
Scaffold Count 9
N50 Scaffolds 1,976,195 bp
Longest Scaffold 2,476,828 bp
Genome Size 5,183,708 bp
Protein Count 4,766
Coding Density 87.03%
GC Percentage 50.43%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_89_4-5885604_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885738
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000457265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 4,974
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 23
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281026
Total Gap Length 18364
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVVK00000000.1