Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 61 (4-2736020)
NCBI Strain Identifiers HVH 61 (4-2736020)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 29
N50 Contigs 322,300 bp
Longest Contig 644,402 bp
Scaffold Count 8
N50 Scaffolds 3,048,834 bp
Longest Scaffold 3,048,834 bp
Genome Size 5,222,042 bp
Protein Count 4,820
Coding Density 87.05%
GC Percentage 50.48%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_61_4-2736020_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885718
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000456905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,056
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 21
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281006
Total Gap Length 14597
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVUR00000000.1