Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 44 (4-2298570)
NCBI Strain Identifiers HVH 44 (4-2298570)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 6
tRNA Count 20
Contig Count 41
N50 Contigs 264,916 bp
Longest Contig 698,758 bp
Scaffold Count 8
N50 Scaffolds 2,977,197 bp
Longest Scaffold 2,977,197 bp
Genome Size 5,233,477 bp
Protein Count 4,743
Coding Density 86.66%
GC Percentage 50.63%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_44_4-2298570_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885706
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000456705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,183
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 33
Species Taxid 562
SSU Count 5
Submitter Broad Institute
Taxid 1280994
Total Gap Length 65934
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVUH00000000.1