Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 7 (4-7315031)
NCBI Strain Identifiers HVH 7 (4-7315031)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 8
23S Count 10
tRNA Count 20
Contig Count 55
N50 Contigs 202,223 bp
Longest Contig 458,298 bp
Scaffold Count 23
N50 Scaffolds 634,574 bp
Longest Scaffold 907,590 bp
Genome Size 5,281,551 bp
Protein Count 4,875
Coding Density 86.70%
GC Percentage 50.51%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_7_4-7315031_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885674
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000456125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,106
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 32
Species Taxid 562
SSU Count 8
Submitter Broad Institute
Taxid 1280962
Total Gap Length 22868
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVTD00000000.1