Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 2 (4-6943160)
NCBI Strain Identifiers HVH 2 (4-6943160)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 44
N50 Contigs 356,416 bp
Longest Contig 630,911 bp
Scaffold Count 19
N50 Scaffolds 2,753,475 bp
Longest Scaffold 2,753,475 bp
Genome Size 5,212,184 bp
Protein Count 4,841
Coding Density 86.72%
GC Percentage 50.52%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_2_4-6943160_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885669
Country Denmark
Date 2013-08-29
Genbank Assembly Accession GCA_000456025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,036
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 25
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1280957
Total Gap Length 48182
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVSY00000000.1