Vibrio parahaemolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus 949
NCBI Strain Identifiers 949
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 100.0
5S Count 14
16S Count 14
23S Count 15
tRNA Count 20
Contig Count 7
N50 Contigs 972,111 bp
Longest Contig 1,398,079 bp
Scaffold Count 7
N50 Scaffolds 972,111 bp
Longest Scaffold 1,398,079 bp
Genome Size 5,179,240 bp
Protein Count 4,589
Coding Density 86.01%
GC Percentage 45.39%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM45445v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02190054
Country None
Date 2013-08-23
Genbank Assembly Accession GCA_000454455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,786
Refseq Category na
Seq Rel Date 2013/08/23
Spanned Gaps 0
Species Taxid 670
SSU Count 14
Submitter IGS
Taxid 1238199
Total Gap Length 0
Translation Table 11
tRNA Count (total) 132
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVPV00000000.1