Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae CC1544
NCBI Strain Identifiers CC1544
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.86%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 376
N50 Contigs 29,886 bp
Longest Contig 114,546 bp
Scaffold Count 376
N50 Scaffolds 29,886 bp
Longest Scaffold 114,546 bp
Genome Size 5,883,551 bp
Protein Count 5,310
Coding Density 88.92%
GC Percentage 59.07%
Ambiguous Bases 1
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CC1544_092313_2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471558
Country France
Date 2013-11-27
Genbank Assembly Accession GCA_000452905.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lake water
Latitude Longitude None
Molecule Count N/A
CDS Count 5,437
Refseq Category na
Seq Rel Date 2013/11/27
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Arizona
Taxid 1357278
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVEI00000000.2