Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae CC1630
NCBI Strain Identifiers CC1630
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 50.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 283
N50 Contigs 52,218 bp
Longest Contig 182,258 bp
Scaffold Count 283
N50 Scaffolds 52,218 bp
Longest Scaffold 182,258 bp
Genome Size 6,056,064 bp
Protein Count 5,518
Coding Density 88.45%
GC Percentage 58.52%
Ambiguous Bases N/A
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CC1630_092313_2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471552
Country USA: MT
Date 2013-11-27
Genbank Assembly Accession GCA_000452625.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sainfoin
Latitude Longitude None
Molecule Count N/A
CDS Count 5,687
Refseq Category na
Seq Rel Date 2013/11/27
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Arizona
Taxid 1357283
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVED00000000.2