Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. syringae; x__Pseudomonas syringae pv. syringae 1212
NCBI Strain Identifiers 1212
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002905995.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 338
N50 Contigs 61,944 bp
Longest Contig 306,351 bp
Scaffold Count 338
N50 Scaffolds 61,944 bp
Longest Scaffold 306,351 bp
Genome Size 6,163,906 bp
Protein Count 5,461
Coding Density 87.87%
GC Percentage 59.12%
Ambiguous Bases N/A
GTDB representative GCA_002905995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Psy1212_130925_2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471561
Country United Kingdom
Date 2013-11-27
Genbank Assembly Accession GCA_000452465.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,644
Refseq Category na
Seq Rel Date 2013/11/27
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter University of Arizona
Taxid 1357293
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVCR00000000.2