Clostridioides difficile
Isolate HQ 5S/16S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile P29
NCBI Strain Identifiers P29
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.16%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 8
23S Count 3
tRNA Count 13
Contig Count 63
N50 Contigs 145,474 bp
Longest Contig 459,701 bp
Scaffold Count 63
N50 Scaffolds 145,474 bp
Longest Scaffold 459,701 bp
Genome Size 4,156,041 bp
Protein Count 3,756
Coding Density 83.36%
GC Percentage 28.83%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM45174v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766699
Country None
Date 2013-8-20
Genbank Assembly Accession GCA_000451745.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,846
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 9
Submitter Institute for Genome Sciences
Taxid 1151411
Total Gap Length 0
Translation Table 11
tRNA Count (total) 25
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVMD00000000.1