Clostridioides difficile
Isolate MQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile CD127
NCBI Strain Identifiers CD127
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 81.03%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 5
tRNA Count 17
Contig Count 985
N50 Contigs 6,247 bp
Longest Contig 49,296 bp
Scaffold Count 985
N50 Scaffolds 6,247 bp
Longest Scaffold 49,296 bp
Genome Size 3,727,657 bp
Protein Count 3,658
Coding Density 86.10%
GC Percentage 28.66%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM45132v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766582
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000451325.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,644
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 6
Submitter Institute for Genome Sciences
Taxid 1151284
Total Gap Length 0
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVHO00000000.1