Clostridioides difficile
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile DA00310
NCBI Strain Identifiers DA00310
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 97.76%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 60.0
5S Count 6
16S Count 7
23S Count 3
tRNA Count 19
Contig Count 615
N50 Contigs 10,621 bp
Longest Contig 58,126 bp
Scaffold Count 615
N50 Scaffolds 10,621 bp
Longest Scaffold 58,126 bp
Genome Size 3,909,936 bp
Protein Count 3,620
Coding Density 84.85%
GC Percentage 28.56%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM45068v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766680
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000450685.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,650
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 10
Submitter Institute for Genome Sciences
Taxid 1151362
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVKK00000000.1