Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile DA00244
NCBI Strain Identifiers DA00244
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 11
23S Count 19
tRNA Count 20
Contig Count 15
N50 Contigs 761,856 bp
Longest Contig 1,922,998 bp
Scaffold Count 15
N50 Scaffolds 761,856 bp
Longest Scaffold 1,922,998 bp
Genome Size 4,067,645 bp
Protein Count 3,585
Coding Density 82.53%
GC Percentage 28.54%
Ambiguous Bases 4
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM45056v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01978899
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000450565.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,638
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 11
Submitter Institute for Genome Sciences
Taxid 1151352
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVKA00000000.1