Clostridioides difficile
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile DA00197
NCBI Strain Identifiers DA00197
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 9
23S Count 8
tRNA Count 18
Contig Count 18
N50 Contigs 451,615 bp
Longest Contig 748,619 bp
Scaffold Count 18
N50 Scaffolds 451,615 bp
Longest Scaffold 748,619 bp
Genome Size 4,122,528 bp
Protein Count 3,672
Coding Density 83.31%
GC Percentage 28.29%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM45038v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01978898
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000450385.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,704
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 9
Submitter Institute for Genome Sciences
Taxid 1151343
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVJR00000000.1