Clostridioides difficile
Isolate HQ 5S/16S/23S 11 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile 840
NCBI Strain Identifiers 840
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 97.24%
CheckM Contamination 2.55%
CheckM Strain Heterogeneity 91.3
5S Count 5
16S Count 4
23S Count 1
tRNA Count 11
Contig Count 183
N50 Contigs 42,377 bp
Longest Contig 112,564 bp
Scaffold Count 183
N50 Scaffolds 42,377 bp
Longest Scaffold 112,564 bp
Genome Size 4,052,127 bp
Protein Count 3,771
Coding Density 83.78%
GC Percentage 28.29%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44980v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766566
Country None
Date 2013-8-20
Genbank Assembly Accession GCA_000449805.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,747
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 8
Submitter Institute for Genome Sciences
Taxid 1151310
Total Gap Length 0
Translation Table 11
tRNA Count (total) 21
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVIN00000000.1