Clostridioides difficile
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile CD40
NCBI Strain Identifiers CD40
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 95.49%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 33.33
5S Count 5
16S Count 8
23S Count 4
tRNA Count 14
Contig Count 97
N50 Contigs 100,634 bp
Longest Contig 221,181 bp
Scaffold Count 97
N50 Scaffolds 100,634 bp
Longest Scaffold 221,181 bp
Genome Size 4,069,381 bp
Protein Count 3,796
Coding Density 83.82%
GC Percentage 28.64%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44896v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766614
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000448965.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,786
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 9
Submitter Institute for Genome Sciences
Taxid 1151263
Total Gap Length 0
Translation Table 11
tRNA Count (total) 28
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVGT00000000.1