Clostridioides difficile
Isolate HQ 5S/16S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile CD38
NCBI Strain Identifiers CD38
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.72%
CheckM Strain Heterogeneity 60.0
5S Count 5
16S Count 4
23S Count 4
tRNA Count 13
Contig Count 122
N50 Contigs 63,409 bp
Longest Contig 162,012 bp
Scaffold Count 122
N50 Scaffolds 63,409 bp
Longest Scaffold 162,012 bp
Genome Size 4,046,775 bp
Protein Count 3,739
Coding Density 83.49%
GC Percentage 28.38%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44892v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766612
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000448925.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,752
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 9
Submitter Institute for Genome Sciences
Taxid 1151261
Total Gap Length 0
Translation Table 11
tRNA Count (total) 25
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVGR00000000.1