Clostridioides difficile
Isolate HQ 5S/16S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile CD21
NCBI Strain Identifiers CD21
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 2
23S Count 1
tRNA Count 13
Contig Count 159
N50 Contigs 47,920 bp
Longest Contig 208,274 bp
Scaffold Count 159
N50 Scaffolds 47,920 bp
Longest Scaffold 208,274 bp
Genome Size 4,041,992 bp
Protein Count 3,707
Coding Density 84.01%
GC Percentage 28.46%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44874v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01766605
Country USA
Date 2013-8-20
Genbank Assembly Accession GCA_000448745.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,723
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 1496
SSU Count 9
Submitter Institute for Genome Sciences
Taxid 1151258
Total Gap Length 0
Translation Table 11
tRNA Count (total) 23
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVGO00000000.1