GTDB Taxonomy | d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius |
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Filtered NCBI Taxonomy | d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius |
Unfiltered NCBI Taxonomy | d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius |
NCBI Strain Identifiers | HSISS4 |
GTDB Type Material Designation | not type material |
GTDB Representative of Species | False (representative is GCA_000785515.1 ) |
CheckM Completeness | 99.68% |
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CheckM Contamination | 1.02% |
CheckM Strain Heterogeneity | 0.0 |
5S Count | 6 |
16S Count | 6 |
23S Count | 6 |
tRNA Count | 20 |
Contig Count | 1 |
N50 Contigs | 2,100,988 bp |
Longest Contig | 2,100,988 bp |
Scaffold Count | 1 |
N50 Scaffolds | 2,100,988 bp |
Longest Scaffold | 2,100,988 bp |
Genome Size | 2,100,988 bp |
Protein Count | 1,876 |
Coding Density | 87.66% |
GC Percentage | 40.22% |
Ambiguous Bases | N/A |
GTDB representative | GCA_000785515.1 |
GTDB representative of species | False |
Assembly Level | Complete Genome |
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Assembly Name | ASM44868v2 |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMN02471219 |
Country | Netherlands |
Date | 2015-12-7 |
Genbank Assembly Accession | GCA_000448685.2 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar |
Latitude Longitude | None |
Molecule Count | 1 |
CDS Count | 1,893 |
Refseq Category | na |
Seq Rel Date | 2015/12/07 |
Spanned Gaps | 0 |
Species Taxid | 1304 |
SSU Count | 6 |
Submitter | Top Institute Food and Nutrition (TIFN) |
Taxid | 1304 |
Total Gap Length | 0 |
Translation Table | 11 |
tRNA Count (total) | 68 |
Type Material | None |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | None |