| GTDB Taxonomy | d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius |
|---|---|
| Filtered NCBI Taxonomy | d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius |
| Unfiltered NCBI Taxonomy | d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius |
| NCBI Strain Identifiers | HSISS4 |
| GTDB Type Material Designation | not type material |
| GTDB Representative of Species | False (representative is GCA_000785515.1) |
| CheckM Completeness | 99.68% |
|---|---|
| CheckM Contamination | 1.02% |
| CheckM Strain Heterogeneity | 0.0 |
| 5S Count | 6 |
| 16S Count | 6 |
| 23S Count | 6 |
| tRNA Count | 20 |
| Contig Count | 1 |
| N50 Contigs | 2,100,988 bp |
| Longest Contig | 2,100,988 bp |
| Scaffold Count | 1 |
| N50 Scaffolds | 2,100,988 bp |
| Longest Scaffold | 2,100,988 bp |
| Genome Size | 2,100,988 bp |
| Protein Count | 1,876 |
| Coding Density | 87.66% |
| GC Percentage | 40.22% |
| Ambiguous Bases | N/A |
| GTDB representative | GCA_000785515.1 |
| GTDB representative of species | False |
| Assembly Level | Complete Genome |
|---|---|
| Assembly Name | ASM44868v2 |
| Assembly Type | n/a |
| Bioproject | PRJNA224116 |
| Biosample | SAMN02471219 |
| Country | Netherlands |
| Date | 2015-12-7 |
| Genbank Assembly Accession | GCA_000448685.2 |
| Genome Category | Isolate |
| Genome Representation | full |
| Isolate | None |
| Isolation Source | ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar |
| Latitude Longitude | None |
| Molecule Count | 1 |
| CDS Count | 1,893 |
| Refseq Category | na |
| Seq Rel Date | 2015/12/07 |
| Spanned Gaps | 0 |
| Species Taxid | 1304 |
| SSU Count | 6 |
| Submitter | Top Institute Food and Nutrition (TIFN) |
| Taxid | 1304 |
| Total Gap Length | 0 |
| Translation Table | 11 |
| tRNA Count (total) | 68 |
| Type Material | None |
| Unspanned Gaps | 0 |
| Version Status | latest |
| WGS Master | None |