Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori PZ5056
NCBI Strain Identifiers PZ5056
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 96.36%
CheckM Contamination 3.07%
CheckM Strain Heterogeneity 35.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 298
N50 Contigs 9,008 bp
Longest Contig 65,840 bp
Scaffold Count 298
N50 Scaffolds 9,008 bp
Longest Scaffold 65,840 bp
Genome Size 1,603,341 bp
Protein Count 1,774
Coding Density 90.86%
GC Percentage 38.72%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name HP_PZ5056
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470488
Country Colombia: Tuquerres
Date 2013-08-20
Genbank Assembly Accession GCA_000448465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastric sample
Latitude Longitude None
Molecule Count N/A
CDS Count 1,794
Refseq Category na
Seq Rel Date 2013/08/20
Spanned Gaps 0
Species Taxid 210
SSU Count 2
Submitter MIT
Taxid 1337393
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASYU00000000.1