Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli C170_11
NCBI Strain Identifiers C170_11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 459
N50 Contigs 135,426 bp
Longest Contig 259,370 bp
Scaffold Count 459
N50 Scaffolds 135,426 bp
Longest Scaffold 259,370 bp
Genome Size 5,018,678 bp
Protein Count 5,082
Coding Density 88.11%
GC Percentage 50.55%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44714v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436002
Country Denmark
Date 2013-8-13
Genbank Assembly Accession GCA_000447145.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 5,456
Refseq Category na
Seq Rel Date 2013/08/13
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter University of Maryland School of Medicine
Taxid 1127124
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIAJ00000000.1