Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli C78_09C
NCBI Strain Identifiers C78_09C
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 190
N50 Contigs 191,389 bp
Longest Contig 445,332 bp
Scaffold Count 190
N50 Scaffolds 191,389 bp
Longest Scaffold 445,332 bp
Genome Size 4,691,758 bp
Protein Count 4,516
Coding Density 88.49%
GC Percentage 50.65%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44684v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435992
Country Belgium
Date 2013-8-13
Genbank Assembly Accession GCA_000446845.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,867
Refseq Category na
Seq Rel Date 2013/08/13
Spanned Gaps 0
Species Taxid 562
SSU Count 2
Submitter IGS
Taxid 1126921
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIBP00000000.1