Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli C418_89
NCBI Strain Identifiers C418_89
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 146
N50 Contigs 121,629 bp
Longest Contig 325,708 bp
Scaffold Count 146
N50 Scaffolds 121,629 bp
Longest Scaffold 325,708 bp
Genome Size 4,671,355 bp
Protein Count 4,490
Coding Density 88.63%
GC Percentage 50.78%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM44652v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436006
Country Italy
Date 2013-8-13
Genbank Assembly Accession GCA_000446525.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,812
Refseq Category na
Seq Rel Date 2013/08/13
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter IGS
Taxid 1126901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AIAY00000000.1