Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis PanR1006
NCBI Strain Identifiers PanR1006
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 114
N50 Contigs 127,405 bp
Longest Contig 564,591 bp
Scaffold Count 1
N50 Scaffolds 4,409,116 bp
Longest Scaffold 4,409,116 bp
Genome Size 4,409,116 bp
Protein Count 4,125
Coding Density 88.83%
GC Percentage 65.54%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name fedora1006_IS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471099
Country Panama
Date 2013-8-15
Genbank Assembly Accession GCA_000445975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical isolate
Latitude Longitude None
Molecule Count 1
CDS Count 4,251
Refseq Category na
Seq Rel Date 2013/08/15
Spanned Gaps 113
Species Taxid 1773
SSU Count 1
Submitter Texas A&M University
Taxid 1352598
Total Gap Length 44232
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATST00000000.1