Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis PanR0409
NCBI Strain Identifiers PanR0409
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 102
N50 Contigs 183,384 bp
Longest Contig 548,025 bp
Scaffold Count 1
N50 Scaffolds 4,402,591 bp
Longest Scaffold 4,402,591 bp
Genome Size 4,402,591 bp
Protein Count 4,097
Coding Density 89.29%
GC Percentage 65.56%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name fedora0409_IS
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471070
Country Panama
Date 2013-8-8
Genbank Assembly Accession GCA_000443505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical isolate
Latitude Longitude None
Molecule Count 1
CDS Count 4,243
Refseq Category na
Seq Rel Date 2013/08/08
Spanned Gaps 101
Species Taxid 1773
SSU Count 1
Submitter Texas A&M University
Taxid 1346768
Total Gap Length 30638
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATEA00000000.1