Mannheimia haemolytica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Mannheimia; s__Mannheimia haemolytica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Mannheimia; s__Mannheimia haemolytica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Mannheimia; s__Mannheimia haemolytica; x__Mannheimia haemolytica MhSwine2000
NCBI Strain Identifiers MhSwine2000
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004342115.1)
Genome Characteristics
CheckM Completeness 99.7%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 33.33
5S Count 4
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 74
N50 Contigs 82,370 bp
Longest Contig 285,978 bp
Scaffold Count 74
N50 Scaffolds 82,370 bp
Longest Scaffold 285,978 bp
Genome Size 2,708,570 bp
Protein Count 2,822
Coding Density 88.92%
GC Percentage 41.04%
Ambiguous Bases 1
GTDB representative GCA_004342115.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MhSwine2000v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02116557
Country USA: Iowa
Date 2013-08-02
Genbank Assembly Accession GCA_000443185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lung
Latitude Longitude None
Molecule Count N/A
CDS Count 2,764
Refseq Category na
Seq Rel Date 2013/08/02
Spanned Gaps 0
Species Taxid 75985
SSU Count 4
Submitter National Animal Disease Center
Taxid 1329903
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATTA00000000.1