| GTDB Taxonomy | d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile |
|---|---|
| Filtered NCBI Taxonomy | d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile |
| Unfiltered NCBI Taxonomy | d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile ATCC 9689 = DSM 1296 |
| NCBI Strain Identifiers | DSM 1296 |
| GTDB Type Material Designation | type strain of species |
| GTDB Representative of Species | True (2,007 genomes in species cluster) |
| CheckM Completeness | 99.51% |
|---|---|
| CheckM Contamination | 0.37% |
| CheckM Strain Heterogeneity | 0.0 |
| 5S Count | 6 |
| 16S Count | 2 |
| 23S Count | 1 |
| tRNA Count | 16 |
| Contig Count | 41 |
| N50 Contigs | 262,259 bp |
| Longest Contig | 750,479 bp |
| Scaffold Count | 30 |
| N50 Scaffolds | 266,743 bp |
| Longest Scaffold | 750,479 bp |
| Genome Size | 4,213,273 bp |
| Protein Count | 3,863 |
| Coding Density | 83.56% |
| GC Percentage | 28.39% |
| Ambiguous Bases | N/A |
| GTDB representative of species | True |
| Assembly Level | Scaffold |
|---|---|
| Assembly Name | ASM43884v1 |
| Assembly Type | n/a |
| Bioproject | PRJNA224116 |
| Biosample | SAMN02440800 |
| Country | None |
| Date | 2013-07-19 |
| Genbank Assembly Accession | GCA_000438845.1 |
| Genome Category | Isolate |
| Genome Representation | full |
| Isolate | None |
| Isolation Source | None |
| Latitude Longitude | None |
| Molecule Count | N/A |
| CDS Count | 3,899 |
| Refseq Category | na |
| Seq Rel Date | 2013/07/19 |
| Spanned Gaps | 11 |
| Species Taxid | 1496 |
| SSU Count | 8 |
| Submitter | DOE Joint Genome Institute |
| Taxid | 1121308 |
| Total Gap Length | 3354 |
| Translation Table | 11 |
| tRNA Count (total) | 28 |
| Type Material | assembly from type material |
| Unspanned Gaps | 0 |
| Version Status | latest |
| WGS Master | AUOX00000000.1 |