GTDB Taxonomy | d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile |
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Filtered NCBI Taxonomy | d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile |
Unfiltered NCBI Taxonomy | d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile ATCC 9689 = DSM 1296 |
NCBI Strain Identifiers | DSM 1296 |
GTDB Type Material Designation | type strain of species |
GTDB Representative of Species | True (2,007 genomes in species cluster) |
CheckM Completeness | 99.51% |
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CheckM Contamination | 0.37% |
CheckM Strain Heterogeneity | 0.0 |
5S Count | 6 |
16S Count | 2 |
23S Count | 1 |
tRNA Count | 16 |
Contig Count | 41 |
N50 Contigs | 262,259 bp |
Longest Contig | 750,479 bp |
Scaffold Count | 30 |
N50 Scaffolds | 266,743 bp |
Longest Scaffold | 750,479 bp |
Genome Size | 4,213,273 bp |
Protein Count | 3,863 |
Coding Density | 83.56% |
GC Percentage | 28.39% |
Ambiguous Bases | N/A |
GTDB representative of species | True |
Assembly Level | Scaffold |
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Assembly Name | ASM43884v1 |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMN02440800 |
Country | None |
Date | 2013-07-19 |
Genbank Assembly Accession | GCA_000438845.1 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | None |
Latitude Longitude | None |
Molecule Count | N/A |
CDS Count | 3,899 |
Refseq Category | na |
Seq Rel Date | 2013/07/19 |
Spanned Gaps | 11 |
Species Taxid | 1496 |
SSU Count | 8 |
Submitter | DOE Joint Genome Institute |
Taxid | 1121308 |
Total Gap Length | 3354 |
Translation Table | 11 |
tRNA Count (total) | 28 |
Type Material | assembly from type material |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | AUOX00000000.1 |