GCF_000438845.1
Clostridioides difficile
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile ATCC 9689 = DSM 1296
NCBI Strain Identifiers DSM 1296
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2,007 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 1
tRNA Count 16
Contig Count 41
N50 Contigs 262,259 bp
Longest Contig 750,479 bp
Scaffold Count 30
N50 Scaffolds 266,743 bp
Longest Scaffold 750,479 bp
Genome Size 4,213,273 bp
Protein Count 3,863
Coding Density 83.56%
GC Percentage 28.39%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM43884v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440800
Country None
Date 2013-07-19
Genbank Assembly Accession GCA_000438845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,899
Refseq Category na
Seq Rel Date 2013/07/19
Spanned Gaps 11
Species Taxid 1496
SSU Count 8
Submitter DOE Joint Genome Institute
Taxid 1121308
Total Gap Length 3354
Translation Table 11
tRNA Count (total) 28
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUOX00000000.1