Dickeya dianthicola
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Dickeya; s__Dickeya dianthicola
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya dianthicola
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya dianthicola; x__Dickeya dianthicola IPO 980
NCBI Strain Identifiers IPO 980
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000365305.1)
Genome Characteristics
CheckM Completeness 99.73%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 78
N50 Contigs 181,825 bp
Longest Contig 633,360 bp
Scaffold Count 27
N50 Scaffolds 4,662,278 bp
Longest Scaffold 4,662,278 bp
Genome Size 4,840,931 bp
Protein Count 4,251
Coding Density 85.24%
GC Percentage 55.69%
Ambiguous Bases N/A
GTDB representative GCA_000365305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name DDIIPO980_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470087
Country None
Date 2013-7-17
Genbank Assembly Accession GCA_000430955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,321
Refseq Category na
Seq Rel Date 2013/07/17
Spanned Gaps 51
Species Taxid 204039
SSU Count 1
Submitter James Hutton Institute
Taxid 1225780
Total Gap Length 5100
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOOS00000000.1