Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Deinococcota; c__Deinococci; o__Deinococcales; f__Deinococcaceae; g__Deinococcus; s__Deinococcus ficus
Filtered NCBI Taxonomy d__Bacteria; p__Deinococcus-Thermus; c__Deinococci; o__Deinococcales; f__Deinococcaceae; g__Deinococcus; s__Deinococcus ficus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Deinococcus-Thermus; c__Deinococci; o__Deinococcales; f__Deinococcaceae; g__Deinococcus; s__Deinococcus ficus; x__Deinococcus ficus DSM 19119
NCBI Strain Identifiers DSM 19119
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_003444775.1)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 39
N50 Contigs 233,487 bp
Longest Contig 488,810 bp
Scaffold Count 38
N50 Scaffolds 233,487 bp
Longest Scaffold 488,810 bp
Genome Size 4,144,558 bp
Protein Count 4,004
Coding Density 89.54%
GC Percentage 69.97%
Ambiguous Bases N/A
GTDB representative GCA_003444775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM43086v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441464
Country Taiwan
Date 2013-07-16
Genbank Assembly Accession GCA_000430865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,953
Refseq Category representative genome
Seq Rel Date 2013/07/16
Spanned Gaps 1
Species Taxid 317577
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1121379
Total Gap Length 70
Translation Table 11
tRNA Count (total) 58
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUMV00000000.1