Alicyclobacillus_G herbarius
Isolate HQ 5S/16S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Alicyclobacillia; o__Alicyclobacillales; f__Alicyclobacillaceae; g__Alicyclobacillus_G; s__Alicyclobacillus_G herbarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Alicyclobacillaceae; g__Alicyclobacillus; s__Alicyclobacillus herbarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Alicyclobacillaceae; g__Alicyclobacillus; s__Alicyclobacillus herbarius; x__Alicyclobacillus herbarius DSM 13609
NCBI Strain Identifiers DSM 13609
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.56%
CheckM Contamination 1.05%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 0
tRNA Count 20
Contig Count 59
N50 Contigs 136,878 bp
Longest Contig 293,107 bp
Scaffold Count 57
N50 Scaffolds 136,878 bp
Longest Scaffold 293,107 bp
Genome Size 3,310,509 bp
Protein Count 3,226
Coding Density 87.09%
GC Percentage 57.16%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM43058v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440806
Country None
Date 2013-07-16
Genbank Assembly Accession GCA_000430585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,127
Refseq Category representative genome
Seq Rel Date 2013/07/16
Spanned Gaps 2
Species Taxid 122960
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1120972
Total Gap Length 2035
Translation Table 11
tRNA Count (total) 68
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUMH00000000.1