Bifidobacterium tsurumiense
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium tsurumiense
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium tsurumiense
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium tsurumiense; x__Bifidobacterium tsurumiense DSM 17777
NCBI Strain Identifiers DSM 17777
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000741765.1)
Genome Characteristics
CheckM Completeness 99.09%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 27
N50 Contigs 128,560 bp
Longest Contig 373,920 bp
Scaffold Count 26
N50 Scaffolds 131,470 bp
Longest Scaffold 373,920 bp
Genome Size 2,166,541 bp
Protein Count 1,736
Coding Density 86.09%
GC Percentage 52.87%
Ambiguous Bases N/A
GTDB representative GCA_000741765.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42974v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440869
Country Japan
Date 2013-07-15
Genbank Assembly Accession GCA_000429745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,693
Refseq Category na
Seq Rel Date 2013/07/15
Spanned Gaps 1
Species Taxid 356829
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1121112
Total Gap Length 526
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUCL00000000.1