Algoriphagus marincola
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae; g__Algoriphagus; s__Algoriphagus marincola
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cyclobacteriaceae; g__Algoriphagus; s__Algoriphagus marincola
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cyclobacteriaceae; g__Algoriphagus; s__Algoriphagus marincola; x__Algoriphagus marincola DSM 16067
NCBI Strain Identifiers DSM 16067
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 35
N50 Contigs 432,015 bp
Longest Contig 571,549 bp
Scaffold Count 27
N50 Scaffolds 446,020 bp
Longest Scaffold 658,794 bp
Genome Size 4,431,678 bp
Protein Count 3,902
Coding Density 90.96%
GC Percentage 41.92%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42940v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440616
Country South Korea
Date 2013-09-05
Genbank Assembly Accession GCA_000429405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,886
Refseq Category representative genome
Seq Rel Date 2013/09/05
Spanned Gaps 8
Species Taxid 264027
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1120966
Total Gap Length 4450
Translation Table 11
tRNA Count (total) 40
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUBU00000000.1