Geothrix fermentans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Acidobacteriota; c__Holophagae; o__Holophagales; f__Holophagaceae; g__Geothrix; s__Geothrix fermentans
Filtered NCBI Taxonomy d__Bacteria; p__Acidobacteria; c__Holophagae; o__Holophagales; f__Holophagaceae; g__Geothrix; s__Geothrix fermentans
Unfiltered NCBI Taxonomy d__Bacteria; p__Acidobacteria; c__Holophagae; o__Holophagales; f__Holophagaceae; g__Geothrix; s__Geothrix fermentans; x__Geothrix fermentans DSM 14018
NCBI Strain Identifiers DSM 14018
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.12%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 42
N50 Contigs 148,216 bp
Longest Contig 371,210 bp
Scaffold Count 36
N50 Scaffolds 164,722 bp
Longest Scaffold 766,188 bp
Genome Size 3,289,813 bp
Protein Count 2,923
Coding Density 91.04%
GC Percentage 68.89%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42888v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441206
Country USA
Date 2013-07-15
Genbank Assembly Accession GCA_000428885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 32.930 N 80.008 W
Molecule Count N/A
CDS Count 2,917
Refseq Category representative genome
Seq Rel Date 2013/07/15
Spanned Gaps 6
Species Taxid 44676
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1121920
Total Gap Length 1925
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUAU00000000.1