Zooshikella ganghwensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Zooshikellaceae; g__Zooshikella; s__Zooshikella ganghwensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Oceanospirillales; f__Hahellaceae; g__Zooshikella; s__Zooshikella ganghwensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Oceanospirillales; f__Hahellaceae; g__Zooshikella; s__Zooshikella ganghwensis; x__Zooshikella ganghwensis DSM 15267
NCBI Strain Identifiers DSM 15267
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 2.23%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 416
N50 Contigs 30,942 bp
Longest Contig 127,707 bp
Scaffold Count 414
N50 Scaffolds 30,942 bp
Longest Scaffold 127,707 bp
Genome Size 5,798,664 bp
Protein Count 5,312
Coding Density 83.60%
GC Percentage 41.02%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42858v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441217
Country South Korea
Date 2013-07-15
Genbank Assembly Accession GCA_000428585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,137
Refseq Category representative genome
Seq Rel Date 2013/07/15
Spanned Gaps 2
Species Taxid 202772
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1123509
Total Gap Length 380
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUAF00000000.1