Mesorhizobium sp000427725
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Mesorhizobium; s__Mesorhizobium sp000427725
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Phyllobacteriaceae; g__Mesorhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Phyllobacteriaceae; g__Mesorhizobium; s__Mesorhizobium sp. WSM3224
NCBI Strain Identifiers WSM3224
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 74
N50 Contigs 238,546 bp
Longest Contig 754,761 bp
Scaffold Count 72
N50 Scaffolds 238,546 bp
Longest Scaffold 754,761 bp
Genome Size 7,096,802 bp
Protein Count 6,876
Coding Density 86.05%
GC Percentage 63.09%
Ambiguous Bases 105
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42772v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440597
Country South Africa
Date 2013-07-15
Genbank Assembly Accession GCA_000427725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 33.68 S 18.69 E
Molecule Count N/A
CDS Count 6,929
Refseq Category na
Seq Rel Date 2013/07/15
Spanned Gaps 2
Species Taxid 1040986
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1040986
Total Gap Length 245
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATYO00000000.1