Cyclobacterium qasimii
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Cyclobacteriaceae; g__Cyclobacterium; s__Cyclobacterium qasimii
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cyclobacteriaceae; g__Cyclobacterium; s__Cyclobacterium qasimii
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cyclobacteriaceae; g__Cyclobacterium; s__Cyclobacterium qasimii; x__Cyclobacterium qasimii M12-11B
NCBI Strain Identifiers M12-11B
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.3%
CheckM Contamination 2.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 202
N50 Contigs 107,474 bp
Longest Contig 248,907 bp
Scaffold Count 202
N50 Scaffolds 107,474 bp
Longest Scaffold 248,907 bp
Genome Size 6,291,928 bp
Protein Count 5,601
Coding Density 85.81%
GC Percentage 38.75%
Ambiguous Bases 4
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name CyQa1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469438
Country None
Date 2013-07-15
Genbank Assembly Accession GCA_000427295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,109
Refseq Category representative genome
Seq Rel Date 2013/07/15
Spanned Gaps 0
Species Taxid 1350429
SSU Count 1
Submitter Centre for Cellular and Molecular Biology
Taxid 641524
Total Gap Length 0
Translation Table 11
tRNA Count (total) 39
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ATNM00000000.1