Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio litoralis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio litoralis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio litoralis; x__Vibrio litoralis DSM 17657
NCBI Strain Identifiers DSM 17657
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 96.08%
CheckM Contamination 1.71%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 0
tRNA Count 16
Contig Count 24
N50 Contigs 344,268 bp
Longest Contig 529,529 bp
Scaffold Count 20
N50 Scaffolds 383,666 bp
Longest Scaffold 706,189 bp
Genome Size 3,823,881 bp
Protein Count 3,444
Coding Density 86.86%
GC Percentage 41.93%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42676v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440646
Country South Korea
Date 2013-07-11
Genbank Assembly Accession GCA_000426765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,408
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 4
Species Taxid 335972
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1123493
Total Gap Length 495
Translation Table 11
tRNA Count (total) 61
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUFZ00000000.1