Propionibacterium acidifaciens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium acidifaciens
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium acidifaciens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium acidifaciens; x__Propionibacterium acidifaciens DSM 21887
NCBI Strain Identifiers DSM 21887
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.46%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 88
N50 Contigs 75,952 bp
Longest Contig 375,922 bp
Scaffold Count 85
N50 Scaffolds 76,103 bp
Longest Scaffold 375,922 bp
Genome Size 3,043,901 bp
Protein Count 2,609
Coding Density 86.56%
GC Percentage 70.58%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42660v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441526
Country United Kingdom
Date 2013-07-11
Genbank Assembly Accession GCA_000426605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,543
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 3
Species Taxid 556499
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1122994
Total Gap Length 480
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUFR00000000.1